diff --git a/CLAUDE.md b/CLAUDE.md
new file mode 100644
index 0000000..4fe8cb3
--- /dev/null
+++ b/CLAUDE.md
@@ -0,0 +1,93 @@
+# CLAUDE.md
+
+This file provides guidance to Claude Code (claude.ai/code) when working with code in this repository.
+
+## Project overview
+
+`id-configurator` is a proprietary CLI tool by InterDiode to "configure a device in an air-gapped environment".
+It targets Python 3.13+ and is packaged with the `uv_build` backend.
+It takes a configuration (JSON or YAML, either from a file or from a base64-encoded environment variable) and applies it to the system, including installing root certificates, configuring package managers, and other system-level settings.
+Modified files are written to a destination directory given with --dst by the user, this directory can be used to build a Docker image.
+The original file system can be provided with --src by the user to detect existing configuration.
+
+Example:
+- the configuration specifies a root certificate to install, the tool will copy it to `<dst>/etc/ssl/certs` and update the system's CA certificates.
+- the configuration specifies a apt source to add and `<src>` contains an existing `/etc/apt/sources.list`, the tool will merge the new source into the existing sources and write the result to `<dst>/etc/apt/sources.list`.
+
+The configuration is expected to be a JSON or YAML object with the following structure:
+
+```yaml
+uuid: <UUID>
+organisation: <string>
+description: <string>
+configurations:
+    certificates:
+      - name: <string>
+        content: <base64-encoded PEM>
+    apt:
+        sources:
+            - name: <string>
+              content: <string>
+        keys:
+            - name: <string>
+              content: <base64-encoded GPG key>
+    yum:
+        repositories:
+            - name: <string>
+              index-url: <string>
+              gpg-url: <string>
+    python:
+        repositories:
+            - name: <string>
+              index-url: <string>
+```
+
+The tool must have an extensible modular structure. Each module can use any part of the configuration, detect if is relevant by checking the current filesystem from `<src>`, and write modified files to `<dst>`.
+Several modules can read the certificates from the configuration and use them differently.
+The tool must be able to run in a Docker container, and must not require any network access.
+It is forbidden to write any file outside of `<dst>`.
+
+The tool must be called by `python -m id_configurator`, or via the console script entry point `id-configurator`.
+
+Here is a preliminary list of modules that will be implemented:
+- install root certificates in the system's CA store
+- configure system package managers:
+  - apt
+  - yum
+  - apk
+  - dnf
+- configure programming language package managers:
+  - python (pip)
+  - ruby (gem)
+  - nodejs (npm)
+  - golang (go)
+  - java (maven, gradle)
+  - php (composer)
+  -
+
+## Current state
+
+This repository is a skeleton: `id_configurator/__init__.py` is currently empty, and `README.md` is empty. `pyproject.toml` already declares a console-script entry point:
+
+```
+id-configurator = "id_configurator:main"
+```
+
+There is no `main` callable yet — implementing it in `id_configurator/__init__.py` (or importing it there) is the first thing needed to make the CLI runnable. No tests, no `[tool.ruff]`/`[tool.pytest]` config, and no CI config exist yet.
+
+## Commands
+
+- Install/sync dependencies: `uv sync`
+- Run the CLI (once `main` exists): `uv run id-configurator`
+- Lint and auto-fix: `uv run ruff check --fix .`
+- Format: `uv run ruff format .`
+- Run all pre-commit hooks (ruff, bandit, shellcheck, commitizen, check-yaml/toml/json, etc.): `uv run pre-commit run --all-files`
+
+There is no test suite yet.
+
+## Conventions
+
+- Python version is pinned to 3.13 (`.python-version`, `requires-python = ">=3.13"` in `pyproject.toml`).
+- `.editorconfig`: 4-space indentation, single quotes, LF line endings, 120 max line length for `.py` files.
+- Commit messages are linted by commitizen via pre-commit, implying Conventional Commits format.
+- The package is proprietary (`Private :: Do Not Upload` classifier) and is not published to PyPI.
diff --git a/id_configurator/__init__.py b/id_configurator/__init__.py
index e69de29..28b6a26 100644
--- a/id_configurator/__init__.py
+++ b/id_configurator/__init__.py
@@ -0,0 +1,3 @@
+from id_configurator.cli import app, main
+
+__all__ = ["app", "main"]
diff --git a/id_configurator/__main__.py b/id_configurator/__main__.py
new file mode 100644
index 0000000..c05a076
--- /dev/null
+++ b/id_configurator/__main__.py
@@ -0,0 +1,3 @@
+from id_configurator.cli import main
+
+main(__name__)
diff --git a/id_configurator/cli.py b/id_configurator/cli.py
new file mode 100644
index 0000000..36097e0
--- /dev/null
+++ b/id_configurator/cli.py
@@ -0,0 +1,120 @@
+"""Typer CLI for id-configurator."""
+
+from __future__ import annotations
+
+import logging
+from pathlib import Path
+from typing import Annotated
+
+import typer
+
+from id_configurator import modules  # noqa: F401  (registers the built-in modules)
+from id_configurator.config import load_configuration
+from id_configurator.context import Context
+from id_configurator.modules.base import all_modules
+
+app = typer.Typer(
+    name="id-configurator",
+    help="Configure a device in an air-gapped environment.",
+    no_args_is_help=True,
+)
+
+logger = logging.getLogger("id_configurator")
+
+ConfigFileOption = Annotated[
+    Path | None,
+    typer.Option(
+        "--config",
+        exists=True,
+        dir_okay=False,
+        help="Path to a JSON or YAML configuration file.",
+    ),
+]
+ConfigEnvOption = Annotated[
+    str | None,
+    typer.Option(
+        "--config-env",
+        envvar="ID_CONFIGURATOR_CONFIG",
+        help="Base64-encoded JSON/YAML configuration.",
+    ),
+]
+SrcOption = Annotated[
+    Path | None,
+    typer.Option(
+        "--src",
+        exists=True,
+        file_okay=False,
+        help="Existing filesystem used to detect the current configuration.",
+    ),
+]
+DstOption = Annotated[
+    Path,
+    typer.Option(
+        "--dst",
+        file_okay=False,
+        help="Destination directory receiving the modified files.",
+    ),
+]
+VerboseOption = Annotated[
+    bool, typer.Option("--verbose", "-v", help="Enable verbose (debug) logging.")
+]
+
+
+def _configure_logging(verbose: bool) -> None:
+    logging.basicConfig(
+        level=logging.DEBUG if verbose else logging.INFO,
+        format="%(levelname)s %(name)s: %(message)s",
+    )
+
+
+def _load_configuration(config: Path | None, config_env: str | None):
+    if config is None and config_env is None:
+        raise typer.BadParameter(
+            "either --config or --config-env (or $ID_CONFIGURATOR_CONFIG) must be provided"
+        )
+    return load_configuration(config, config_env)
+
+
+@app.command()
+def apply(
+    dst: DstOption,
+    config: ConfigFileOption = None,
+    config_env: ConfigEnvOption = None,
+    src: SrcOption = None,
+    verbose: VerboseOption = False,
+) -> None:
+    """Apply a configuration to the destination directory."""
+    _configure_logging(verbose)
+    configuration = _load_configuration(config, config_env)
+    dst.mkdir(parents=True, exist_ok=True)
+    context = Context(config=configuration, dst=dst, src=src)
+    for module_cls in all_modules():
+        module = module_cls()
+        if module.is_relevant(context):
+            logger.info("applying module %s", module.name)
+            module.apply(context)
+        else:
+            logger.debug("skipping module %s (not relevant)", module.name)
+
+
+@app.command()
+def validate(
+    config: ConfigFileOption = None, config_env: ConfigEnvOption = None
+) -> None:
+    """Validate a configuration file without applying it."""
+    configuration = _load_configuration(config, config_env)
+    typer.echo(
+        f"configuration {configuration.uuid} is valid (organisation: {configuration.organisation})"
+    )
+
+
+@app.command("list-modules")
+def list_modules_command() -> None:
+    """List the available configuration modules."""
+    for module_cls in all_modules():
+        typer.echo(module_cls.name)
+
+
+def main(name: str = "__main__") -> None:
+    if name == "__main__":
+        app()
diff --git a/id_configurator/config.py b/id_configurator/config.py
new file mode 100644
index 0000000..ababa7f
--- /dev/null
+++ b/id_configurator/config.py
@@ -0,0 +1,165 @@
+"""Configuration schema and loading helpers for id-configurator."""
+
+from __future__ import annotations
+
+import base64
+import json
+from pathlib import Path
+from uuid import UUID
+
+import yaml
+from pydantic import BaseModel, ConfigDict, Field
+
+
+class NamedContent(BaseModel):
+    """A named piece of content, generally base64-encoded (a certificate, a GPG key, ...)."""
+
+    name: str
+    content: str
+
+
+def _yes_no(value: bool) -> str:
+    return "yes" if value else "no"
+
+
+class AptSource(BaseModel):
+    """A single APT source, in the DEB822 format (see sources.list(5))."""
+
+    model_config = ConfigDict(populate_by_name=True)
+
+    name: str
+    types: list[str] = Field(default_factory=lambda: ["deb"])
+    uris: list[str]
+    suites: list[str]
+    components: list[str] = Field(default_factory=list)
+    architectures: list[str] = Field(default_factory=list)
+    languages: list[str] = Field(default_factory=list)
+    targets: list[str] = Field(default_factory=list)
+    enabled: bool = True
+    trusted: bool | None = None
+    signed_by: str | None = Field(default=None, alias="signed-by")
+    pdiffs: bool | None = None
+    by_hash: bool | None = Field(default=None, alias="by-hash")
+    allow_insecure: bool | None = Field(default=None, alias="allow-insecure")
+    allow_weak: bool | None = Field(default=None, alias="allow-weak")
+    allow_downgrade_to_insecure: bool | None = Field(
+        default=None, alias="allow-downgrade-to-insecure"
+    )
+    check_valid_until: bool | None = Field(default=None, alias="check-valid-until")
+    valid_until_min: str | None = Field(default=None, alias="valid-until-min")
+    valid_until_max: str | None = Field(default=None, alias="valid-until-max")
+    check_date: bool | None = Field(default=None, alias="check-date")
+    date_max_future: str | None = Field(default=None, alias="date-max-future")
+    description: str | None = None
+
+    def to_deb822(self) -> str:
+        """Render this source as a DEB822 stanza (as used in /etc/apt/sources.list.d/*.sources)."""
+        fields = [
+            ("Types", " ".join(self.types)),
+            ("URIs", " ".join(self.uris)),
+            ("Suites", " ".join(self.suites)),
+        ]
+        if self.components:
+            fields.append(("Components", " ".join(self.components)))
+        if self.architectures:
+            fields.append(("Architectures", " ".join(self.architectures)))
+        if self.languages:
+            fields.append(("Languages", " ".join(self.languages)))
+        if self.targets:
+            fields.append(("Targets", " ".join(self.targets)))
+        if self.signed_by:
+            fields.append(("Signed-By", self.signed_by))
+        if self.trusted is not None:
+            fields.append(("Trusted", _yes_no(self.trusted)))
+        if self.pdiffs is not None:
+            fields.append(("PDiffs", _yes_no(self.pdiffs)))
+        if self.by_hash is not None:
+            fields.append(("By-Hash", _yes_no(self.by_hash)))
+        if self.allow_insecure is not None:
+            fields.append(("Allow-Insecure", _yes_no(self.allow_insecure)))
+        if self.allow_weak is not None:
+            fields.append(("Allow-Weak", _yes_no(self.allow_weak)))
+        if self.allow_downgrade_to_insecure is not None:
+            fields.append(
+                (
+                    "Allow-Downgrade-To-Insecure",
+                    _yes_no(self.allow_downgrade_to_insecure),
+                )
+            )
+        if self.check_valid_until is not None:
+            fields.append(("Check-Valid-Until", _yes_no(self.check_valid_until)))
+        if self.valid_until_min:
+            fields.append(("Valid-Until-Min", self.valid_until_min))
+        if self.valid_until_max:
+            fields.append(("Valid-Until-Max", self.valid_until_max))
+        if self.check_date is not None:
+            fields.append(("Check-Date", _yes_no(self.check_date)))
+        if self.date_max_future:
+            fields.append(("Date-Max-Future", self.date_max_future))
+        if self.description:
+            fields.append(("Description", self.description))
+        fields.append(("Enabled", _yes_no(self.enabled)))
+        return "\n".join(f"{key}: {value}" for key, value in fields) + "\n"
+
+
+class AptConfig(BaseModel):
+    sources: list[AptSource] = Field(default_factory=list)
+    keys: list[NamedContent] = Field(default_factory=list)
+
+
+class YumRepository(BaseModel):
+    model_config = ConfigDict(populate_by_name=True)
+    name: str
+    index_url: str = Field(alias="index-url")
+    gpg_url: str | None = Field(default=None, alias="gpg-url")
+
+
+class YumConfig(BaseModel):
+    repositories: list[YumRepository] = Field(default_factory=list)
+
+
+class PythonRepository(BaseModel):
+    model_config = ConfigDict(populate_by_name=True)
+
+    name: str
+    index_url: str = Field(alias="index-url")
+
+
+class PythonConfig(BaseModel):
+    repositories: list[PythonRepository] = Field(default_factory=list)
+
+
+class ConfigurationsBlock(BaseModel):
+    certificates: list[NamedContent] = Field(default_factory=list)
+    apt: AptConfig = Field(default_factory=AptConfig)
+    yum: YumConfig = Field(default_factory=YumConfig)
+    python: PythonConfig = Field(default_factory=PythonConfig)
+
+
+class Configuration(BaseModel):
+    uuid: UUID
+    organisation: str
+    description: str = ""
+    configurations: ConfigurationsBlock = Field(default_factory=ConfigurationsBlock)
+
+
+def parse_configuration(raw: str) -> Configuration:
+    """Parse a configuration from a JSON or YAML string."""
+    try:
+        data = json.loads(raw)
+    except json.JSONDecodeError:
+        data = yaml.safe_load(raw)
+    return Configuration.model_validate(data)
+
+
+def load_configuration(
+    config_file: Path | None, config_env: str | None
+) -> Configuration:
+    """Load a configuration from a file, or from a base64-encoded string (typically an env var)."""
+    if config_file is not None:
+        raw = config_file.read_text(encoding="utf-8")
+    elif config_env is not None:
+        raw = base64.b64decode(config_env).decode("utf-8")
+    else:
+        raise ValueError("either --config or --config-env must be provided")
+    return parse_configuration(raw)
diff --git a/id_configurator/context.py b/id_configurator/context.py
new file mode 100644
index 0000000..14bc3ae
--- /dev/null
+++ b/id_configurator/context.py
@@ -0,0 +1,56 @@
+"""Execution context shared by all modules.
+
+The context is responsible for enforcing that modules never write outside of
+the destination directory, and gives read access to the (optional) source
+filesystem used to detect the existing configuration.
+"""
+
+from __future__ import annotations
+
+from pathlib import Path
+
+from id_configurator.config import Configuration
+
+
+class Context:
+    def __init__(
+        self, config: Configuration, dst: Path, src: Path | None = None
+    ) -> None:
+        self.config = config
+        self.dst = dst.resolve()
+        self.src = src.resolve() if src is not None else None
+
+    def dst_path(self, relative: str) -> Path:
+        """Resolve a path relative to the destination directory, refusing to escape it."""
+        path = (self.dst / relative.lstrip("/")).resolve()
+        if path != self.dst and self.dst not in path.parents:
+            raise ValueError(
+                f"refusing to write outside of the destination directory: {relative}"
+            )
+        return path
+
+    def src_path(self, relative: str) -> Path | None:
+        """Resolve a path relative to the source directory, or None if no source was given."""
+        if self.src is None:
+            return None
+        return (self.src / relative.lstrip("/")).resolve()
+
+    def write_file(self, relative: str, content: bytes, mode: int = 0o644) -> Path:
+        path = self.dst_path(relative)
+        path.parent.mkdir(parents=True, exist_ok=True)
+        path.write_bytes(content)
+        path.chmod(mode)
+        return path
+
+    def read_src_file(self, relative: str) -> bytes | None:
+        path = self.src_path(relative)
+        if path is None or not path.is_file():
+            return None
+        return path.read_bytes()
+
+    def iter_src_dir(self, relative: str) -> list[Path]:
+        """List the files present in a directory relative to the source filesystem, if any."""
+        path = self.src_path(relative)
+        if path is None or not path.is_dir():
+            return []
+        return sorted(entry for entry in path.iterdir() if entry.is_file())
diff --git a/id_configurator/modules/__init__.py b/id_configurator/modules/__init__.py
new file mode 100644
index 0000000..0fec04d
--- /dev/null
+++ b/id_configurator/modules/__init__.py
@@ -0,0 +1,8 @@
+"""Configuration modules.
+
+Importing this package registers every built-in module (see `base.register`).
+"""
+
+from id_configurator.modules import apt, certificates
+
+__all__ = ["apt", "certificates"]
diff --git a/id_configurator/modules/apt.py b/id_configurator/modules/apt.py
new file mode 100644
index 0000000..066c49a
--- /dev/null
+++ b/id_configurator/modules/apt.py
@@ -0,0 +1,100 @@
+"""Detect existing APT sources and configure new ones, in the DEB822 format.
+
+If `<src>/etc/apt` exists, any source file already present there (classic
+one-line `.list` files or DEB822 `.sources` files, whether at the top level
+or under `sources.list.d/`) is copied into `<dst>/etc/apt`, disabled so it no
+longer takes effect, and the sources declared in the configuration are added
+as new, enabled `.sources` files.
+"""
+
+from __future__ import annotations
+
+import base64
+import logging
+from pathlib import Path
+
+from id_configurator.context import Context
+from id_configurator.modules.base import Module, register
+
+logger = logging.getLogger(__name__)
+
+_APT_DIR = "etc/apt"
+_SOURCES_LIST = "etc/apt/sources.list"
+_SOURCES_LIST_D = "etc/apt/sources.list.d"
+_KEYRINGS_DIR = "etc/apt/keyrings"
+
+
+def _disable_list_content(content: str) -> str:
+    lines = [
+        line if not line.strip() or line.strip().startswith("#") else f"# {line}"
+        for line in content.splitlines()
+    ]
+    return "\n".join(lines) + "\n"
+
+
+def _disable_deb822_content(content: str) -> str:
+    disabled_stanzas = []
+    for stanza in content.split("\n\n"):
+        if not stanza.strip():
+            continue
+        lines = stanza.splitlines()
+        new_lines = [line for line in lines if not line.lower().startswith("enabled:")]
+        new_lines.append("Enabled: no")
+        disabled_stanzas.append("\n".join(new_lines))
+    return "\n\n".join(disabled_stanzas) + "\n"
+
+
+@register
+class AptModule(Module):
+    name = "apt"
+
+    def is_relevant(self, context: Context) -> bool:
+        return self._src_apt_dir(context) is not None
+
+    @staticmethod
+    def _src_apt_dir(context: Context) -> Path | None:
+        path = context.src_path(_APT_DIR)
+        if path is not None and path.is_dir():
+            return path
+        return None
+
+    def apply(self, context: Context) -> None:
+        self._copy_existing_disabled(context)
+        self._write_configured_keys(context)
+        self._write_configured_sources(context)
+
+    @staticmethod
+    def _copy_existing_disabled(context: Context) -> None:
+        existing_top_level = context.read_src_file(_SOURCES_LIST)
+        if existing_top_level is not None:
+            disabled = _disable_list_content(existing_top_level.decode("utf-8"))
+            context.write_file(_SOURCES_LIST, disabled.encode("utf-8"))
+            logger.info("disabled existing apt source list %s", _SOURCES_LIST)
+
+        for entry in context.iter_src_dir(_SOURCES_LIST_D):
+            if entry.suffix == ".sources":
+                disabled = _disable_deb822_content(entry.read_text(encoding="utf-8"))
+            elif entry.suffix == ".list":
+                disabled = _disable_list_content(entry.read_text(encoding="utf-8"))
+            else:
+                continue
+            context.write_file(
+                f"{_SOURCES_LIST_D}/{entry.name}", disabled.encode("utf-8")
+            )
+            logger.info("disabled existing apt source %s", entry.name)
+
+    @staticmethod
+    def _write_configured_keys(context: Context) -> None:
+        for key in context.config.configurations.apt.keys:
+            content = base64.b64decode(key.content)
+            context.write_file(f"{_KEYRINGS_DIR}/{key.name}.asc", content)
+            logger.info("installed apt keyring %s", key.name)
+
+    @staticmethod
+    def _write_configured_sources(context: Context) -> None:
+        for source in context.config.configurations.apt.sources:
+            context.write_file(
+                f"{_SOURCES_LIST_D}/{source.name}.sources",
+                source.to_deb822().encode("utf-8"),
+            )
+            logger.info("added apt source %s", source.name)
diff --git a/id_configurator/modules/base.py b/id_configurator/modules/base.py
new file mode 100644
index 0000000..1d9055a
--- /dev/null
+++ b/id_configurator/modules/base.py
@@ -0,0 +1,36 @@
+"""Base class and registry for configuration modules.
+
+Each module inspects the configuration and the source filesystem (via the
+`Context`) to decide whether it applies, then writes the resulting files to
+the destination directory.
+"""
+
+from __future__ import annotations
+
+from abc import ABC, abstractmethod
+
+from id_configurator.context import Context
+
+_REGISTRY: list[type[Module]] = []
+
+
+class Module(ABC):
+    name: str
+
+    @abstractmethod
+    def is_relevant(self, context: Context) -> bool:
+        """Return True if this module has something to do for the given configuration."""
+
+    @abstractmethod
+    def apply(self, context: Context) -> None:
+        """Write the module's changes to the destination directory."""
+
+
+def register(module_cls: type[Module]) -> type[Module]:
+    """Class decorator registering a module so it is picked up by the CLI."""
+    _REGISTRY.append(module_cls)
+    return module_cls
+
+
+def all_modules() -> list[type[Module]]:
+    return list(_REGISTRY)
diff --git a/id_configurator/modules/certificates.py b/id_configurator/modules/certificates.py
new file mode 100644
index 0000000..e3e1d6f
--- /dev/null
+++ b/id_configurator/modules/certificates.py
@@ -0,0 +1,81 @@
+"""Install root certificates into the system's CA store.
+
+Certificates from the configuration are dropped into the "local" CA
+directory, then the real `update-ca-certificates` binary is invoked to
+rebuild the trust store (bundle + hashed symlinks) exactly like it would on
+a real Debian/Ubuntu system, instead of reimplementing that logic here.
+"""
+
+from __future__ import annotations
+
+import base64
+import logging
+import subprocess
+
+from id_configurator.context import Context
+from id_configurator.modules.base import Module, register
+
+logger = logging.getLogger(__name__)
+
+_LOCAL_CERTS_DIR = "usr/local/share/ca-certificates"
+_CERTSCONF = "etc/ca-certificates.conf"
+_CERTSDIR = "usr/share/ca-certificates"
+_ETCCERTSDIR = "etc/ssl/certs"
+
+
+@register
+class CertificatesModule(Module):
+    name = "certificates"
+
+    def is_relevant(self, context: Context) -> bool:
+        return bool(context.config.configurations.certificates)
+
+    def apply(self, context: Context) -> None:
+        configured_names = {
+            certificate.name
+            for certificate in context.config.configurations.certificates
+        }
+        for existing in context.iter_src_dir(_LOCAL_CERTS_DIR):
+            if existing.stem not in configured_names:
+                context.write_file(
+                    f"{_LOCAL_CERTS_DIR}/{existing.name}", existing.read_bytes()
+                )
+        for certificate in context.config.configurations.certificates:
+            content = base64.b64decode(certificate.content)
+            context.write_file(f"{_LOCAL_CERTS_DIR}/{certificate.name}.crt", content)
+            logger.info("installed root certificate %s", certificate.name)
+        self._update_ca_certificates_conf(context)
+
+    @staticmethod
+    def _update_ca_certificates_conf(context: Context) -> None:
+        etccertsdir = context.dst_path(_ETCCERTSDIR)
+        localcertsdir = context.dst_path(_LOCAL_CERTS_DIR)
+        etccertsdir.mkdir(parents=True, exist_ok=True)
+        localcertsdir.mkdir(parents=True, exist_ok=True)
+
+        args = [
+            "update-ca-certificates",
+            "--etccertsdir",
+            str(etccertsdir),
+            "--localcertsdir",
+            str(localcertsdir),
+        ]
+        certsconf = context.src_path(_CERTSCONF)
+        if certsconf is not None and certsconf.is_file():
+            args += ["--certsconf", str(certsconf)]
+        certsdir = context.src_path(_CERTSDIR)
+        if certsdir is not None and certsdir.is_dir():
+            args += ["--certsdir", str(certsdir)]
+
+        logger.debug("running: %s", " ".join(args))
+        try:
+            result = subprocess.run(args, check=True, capture_output=True, text=True)
+        except FileNotFoundError as exc:
+            raise RuntimeError(
+                "update-ca-certificates is not available; the ca-certificates package must be installed "
+                "in the environment running id-configurator"
+            ) from exc
+        except subprocess.CalledProcessError as exc:
+            raise RuntimeError(f"update-ca-certificates failed:\n{exc.stderr}") from exc
+        if result.stderr:
+            logger.debug("%s", result.stderr.strip())
diff --git a/pyproject.toml b/pyproject.toml
index 0d505d1..48277d6 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -2,6 +2,16 @@
 build-backend = "uv_build"
 requires = ["uv_build>=0.12.3,<0.13.0"]
 
+[dependency-groups]
+dev = [
+  "tox>=4.60.1",
+  "tox-uv>=1.36.0"
+]
+test = [
+  "pytest>=9.1.1",
+  "pytest-cov>=7.1.0"
+]
+
 [project]
 authors = [
   {name = "InterDiode", email = "contact@mail.interdiode.fr"}
@@ -17,7 +27,11 @@ classifiers = [
   'Programming Language :: Python :: 3.13',
   'Programming Language :: Python :: 3.14'
 ]
-dependencies = []
+dependencies = [
+  "pydantic>=2.13.4",
+  "pyyaml>=6.0.3",
+  "typer>=0.27.1"
+]
 description = "Configure a device in an air-gapped environment."
 license = {text = "Proprietary"}
 maintainers = [
@@ -25,11 +39,33 @@ maintainers = [
 ]
 name = "id-configurator"
 readme = "README.md"
-requires-python = ">=3.14"
+requires-python = ">=3.13"
 version = "0.1.0"
 
 [project.scripts]
 id-configurator = "id_configurator:main"
 
+[tool.coverage.paths]
+source = [
+  "id_configurator",
+  "*/site-packages/id_configurator"
+]
+
+[tool.coverage.report]
+exclude_lines = [
+  "pragma: no cover",
+  "if __name__ == .__main__.:"
+]
+fail_under = 100
+show_missing = true
+
+[tool.coverage.run]
+branch = true
+source = ["id_configurator"]
+
+[tool.pytest.ini_options]
+addopts = "--cov=id_configurator --cov-report=term-missing"
+testpaths = ["tests"]
+
 [tool.uv.build-backend]
 module-root = ""
diff --git a/tests/test_apt.py b/tests/test_apt.py
new file mode 100644
index 0000000..a00b6d4
--- /dev/null
+++ b/tests/test_apt.py
@@ -0,0 +1,124 @@
+import base64
+
+from id_configurator.config import Configuration
+from id_configurator.context import Context
+from id_configurator.modules.apt import AptModule
+
+SOURCE_CONTENT = {
+    "uuid": "12345678-1234-5678-1234-567812345678",
+    "organisation": "InterDiode",
+    "configurations": {
+        "apt": {
+            "sources": [
+                {
+                    "name": "interdiode",
+                    "uris": ["http://example.invalid/debian"],
+                    "suites": ["stable"],
+                    "signed-by": "/etc/apt/keyrings/interdiode.asc",
+                }
+            ],
+            "keys": [
+                {
+                    "name": "interdiode",
+                    "content": base64.b64encode(b"fake-key-bytes").decode("ascii"),
+                }
+            ],
+        }
+    },
+}
+
+
+def make_config() -> Configuration:
+    return Configuration.model_validate(SOURCE_CONTENT)
+
+
+def test_is_relevant_false_without_src(tmp_path) -> None:
+    context = Context(config=make_config(), dst=tmp_path / "dst", src=None)
+    assert AptModule().is_relevant(context) is False  # nosec B101
+
+
+def test_is_relevant_false_without_apt_dir(tmp_path) -> None:
+    src = tmp_path / "src"
+    src.mkdir()
+    context = Context(config=make_config(), dst=tmp_path / "dst", src=src)
+    assert AptModule().is_relevant(context) is False  # nosec B101
+
+
+def test_is_relevant_true_with_apt_dir(tmp_path) -> None:
+    src = tmp_path / "src"
+    (src / "etc/apt").mkdir(parents=True)
+    context = Context(config=make_config(), dst=tmp_path / "dst", src=src)
+    assert AptModule().is_relevant(context) is True  # nosec B101
+
+
+def test_apply_disables_existing_sources_and_adds_configured_ones(tmp_path) -> None:
+    src = tmp_path / "src"
+    apt_dir = src / "etc/apt"
+    sources_list_d = apt_dir / "sources.list.d"
+    sources_list_d.mkdir(parents=True)
+
+    (apt_dir / "sources.list").write_text(
+        "# already disabled\ndeb http://example.invalid/legacy stable main\n\n",
+        encoding="utf-8",
+    )
+    (sources_list_d / "extra.list").write_text(
+        "deb http://example.invalid/extra stable main\n", encoding="utf-8"
+    )
+    (sources_list_d / "docker.sources").write_text(
+        "Types: deb\nURIs: http://example.invalid/docker\nSuites: stable\nEnabled: yes\n"
+        "\n"
+        "Types: deb\nURIs: http://example.invalid/docker2\nSuites: stable\n"
+        "\n\n",
+        encoding="utf-8",
+    )
+    (sources_list_d / "ignored.txt").write_text("not a source file\n", encoding="utf-8")
+
+    dst = tmp_path / "dst"
+    context = Context(config=make_config(), dst=dst, src=src)
+
+    AptModule().apply(context)
+
+    disabled_top_level = (dst / "etc/apt/sources.list").read_text(encoding="utf-8")
+    assert (
+        disabled_top_level
+        == "# already disabled\n# deb http://example.invalid/legacy stable main\n\n"
+    )  # nosec B101
+
+    disabled_list = (dst / "etc/apt/sources.list.d/extra.list").read_text(
+        encoding="utf-8"
+    )  # nosec B101
+    assert disabled_list == "# deb http://example.invalid/extra stable main\n"  # nosec B101
+
+    disabled_sources = (dst / "etc/apt/sources.list.d/docker.sources").read_text(
+        encoding="utf-8"
+    )  # nosec B101
+    assert disabled_sources == (  # nosec B101
+        "Types: deb\nURIs: http://example.invalid/docker\nSuites: stable\nEnabled: no"
+        "\n\n"
+        "Types: deb\nURIs: http://example.invalid/docker2\nSuites: stable\nEnabled: no\n"
+    )
+
+    assert not (dst / "etc/apt/sources.list.d/ignored.txt").exists()  # nosec B101
+
+    keyring = (dst / "etc/apt/keyrings/interdiode.asc").read_bytes()
+    assert keyring == b"fake-key-bytes"  # nosec B101
+
+    configured_source = (dst / "etc/apt/sources.list.d/interdiode.sources").read_text(
+        encoding="utf-8"
+    )
+    assert configured_source == (  # nosec B101
+        "Types: deb\nURIs: http://example.invalid/debian\nSuites: stable\n"
+        "Signed-By: /etc/apt/keyrings/interdiode.asc\nEnabled: yes\n"
+    )
+
+
+def test_apply_without_existing_top_level_sources_list(tmp_path) -> None:
+    src = tmp_path / "src"
+    (src / "etc/apt").mkdir(parents=True)
+    dst = tmp_path / "dst"
+    context = Context(config=make_config(), dst=dst, src=src)
+
+    AptModule().apply(context)
+
+    assert not (dst / "etc/apt/sources.list").exists()  # nosec B101
+    assert (dst / "etc/apt/sources.list.d/interdiode.sources").exists()  # nosec B101
diff --git a/tests/test_certificates.py b/tests/test_certificates.py
new file mode 100644
index 0000000..be44158
--- /dev/null
+++ b/tests/test_certificates.py
@@ -0,0 +1,119 @@
+import base64
+import subprocess
+from unittest.mock import MagicMock
+
+import pytest
+
+from id_configurator.config import Configuration
+from id_configurator.context import Context
+from id_configurator.modules.certificates import CertificatesModule
+
+CERT_CONTENT = base64.b64encode(b"fake-cert-bytes").decode("ascii")
+
+
+def make_config(with_certificate: bool) -> Configuration:
+    data = {
+        "uuid": "12345678-1234-5678-1234-567812345678",
+        "organisation": "InterDiode",
+    }
+    if with_certificate:
+        data["configurations"] = {
+            "certificates": [{"name": "new-root-ca", "content": CERT_CONTENT}]
+        }
+    return Configuration.model_validate(data)
+
+
+def test_is_relevant_true_when_certificates_configured(tmp_path) -> None:
+    context = Context(config=make_config(True), dst=tmp_path / "dst", src=None)
+    assert CertificatesModule().is_relevant(context) is True  # nosec B101
+
+
+def test_is_relevant_false_when_no_certificates(tmp_path) -> None:
+    context = Context(config=make_config(False), dst=tmp_path / "dst", src=None)
+    assert CertificatesModule().is_relevant(context) is False  # nosec B101
+
+
+def _mock_success(monkeypatch, stderr: str = "") -> MagicMock:
+    mock_run = MagicMock(
+        return_value=subprocess.CompletedProcess(
+            args=[], returncode=0, stdout="", stderr=stderr
+        )
+    )
+    monkeypatch.setattr("id_configurator.modules.certificates.subprocess.run", mock_run)
+    return mock_run
+
+
+def test_apply_writes_certificate_and_calls_update_ca_certificates(
+    tmp_path, monkeypatch
+) -> None:
+    mock_run = _mock_success(monkeypatch)
+    dst = tmp_path / "dst"
+    context = Context(config=make_config(True), dst=dst, src=None)
+
+    CertificatesModule().apply(context)
+
+    written = dst / "usr/local/share/ca-certificates/new-root-ca.crt"
+    assert written.read_bytes() == b"fake-cert-bytes"  # nosec B101
+    mock_run.assert_called_once()
+    args = mock_run.call_args.args[0]
+    assert args[0] == "update-ca-certificates"  # nosec B101
+    assert "--certsconf" not in args  # nosec B101
+    assert "--certsdir" not in args  # nosec B101
+
+
+def test_apply_preserves_existing_local_certificates_from_src(
+    tmp_path, monkeypatch
+) -> None:
+    mock_run = _mock_success(monkeypatch, stderr="some warning")
+    src = tmp_path / "src"
+    local_certs_dir = src / "usr/local/share/ca-certificates"
+    local_certs_dir.mkdir(parents=True)
+    (local_certs_dir / "existing.crt").write_bytes(b"existing-bytes")
+    (local_certs_dir / "new-root-ca.crt").write_bytes(
+        b"stale-bytes-should-be-overwritten"
+    )
+    (src / "etc/ca-certificates.conf").parent.mkdir(parents=True)
+    (src / "etc/ca-certificates.conf").write_text("existing.crt\n", encoding="utf-8")
+    (src / "usr/share/ca-certificates").mkdir(parents=True)
+
+    dst = tmp_path / "dst"
+    context = Context(config=make_config(True), dst=dst, src=src)
+
+    CertificatesModule().apply(context)
+
+    local_dst = dst / "usr/local/share/ca-certificates"
+    assert (local_dst / "existing.crt").read_bytes() == b"existing-bytes"  # nosec B101
+    assert (local_dst / "new-root-ca.crt").read_bytes() == b"fake-cert-bytes"  # nosec B101
+
+    args = mock_run.call_args.args[0]
+    assert "--certsconf" in args  # nosec B101
+    assert str(src / "etc/ca-certificates.conf") in args  # nosec B101
+    assert "--certsdir" in args  # nosec B101
+    assert str(src / "usr/share/ca-certificates") in args  # nosec B101
+
+
+def test_update_ca_certificates_raises_when_binary_missing(
+    tmp_path, monkeypatch
+) -> None:
+    monkeypatch.setattr(
+        "id_configurator.modules.certificates.subprocess.run",
+        MagicMock(side_effect=FileNotFoundError()),
+    )
+    context = Context(config=make_config(True), dst=tmp_path / "dst", src=None)
+
+    with pytest.raises(RuntimeError, match="update-ca-certificates is not available"):
+        CertificatesModule().apply(context)
+
+
+def test_update_ca_certificates_raises_on_failure(tmp_path, monkeypatch) -> None:
+    error = subprocess.CalledProcessError(
+        returncode=1, cmd=["update-ca-certificates"], stderr="boom"
+    )
+    monkeypatch.setattr(
+        "id_configurator.modules.certificates.subprocess.run",
+        MagicMock(side_effect=error),
+    )
+    context = Context(config=make_config(True), dst=tmp_path / "dst", src=None)
+
+    with pytest.raises(RuntimeError, match="update-ca-certificates failed"):
+        CertificatesModule().apply(context)  # nosec B101
diff --git a/tests/test_cli.py b/tests/test_cli.py
new file mode 100644
index 0000000..69fac16
--- /dev/null
+++ b/tests/test_cli.py
@@ -0,0 +1,93 @@
+import base64
+import json
+import subprocess
+from unittest.mock import MagicMock
+
+from typer.testing import CliRunner
+
+from id_configurator import cli
+
+runner = CliRunner()
+
+MINIMAL_CONFIG = {
+    "uuid": "12345678-1234-5678-1234-567812345678",
+    "organisation": "InterDiode",
+}
+CONFIG_WITH_CERT = {
+    **MINIMAL_CONFIG,
+    "configurations": {
+        "certificates": [
+            {"name": "my-ca", "content": base64.b64encode(b"fake").decode("ascii")}
+        ]
+    },
+}
+
+
+def write_config(tmp_path, data) -> str:
+    path = tmp_path / "config.json"
+    path.write_text(json.dumps(data), encoding="utf-8")
+    return str(path)
+
+
+def test_validate_valid_config(tmp_path) -> None:
+    config_path = write_config(tmp_path, MINIMAL_CONFIG)
+    result = runner.invoke(cli.app, ["validate", "--config", config_path])
+    assert result.exit_code == 0  # nosec B101
+    assert "is valid" in result.stdout  # nosec B101
+
+
+def test_validate_without_config_fails() -> None:
+    result = runner.invoke(cli.app, ["validate"])
+    assert result.exit_code != 0  # nosec B101
+    assert "either --config or --config-env" in result.output  # nosec B101
+
+
+def test_list_modules() -> None:
+    result = runner.invoke(cli.app, ["list-modules"])
+    assert result.exit_code == 0  # nosec B101
+    assert set(result.stdout.splitlines()) == {"apt", "certificates"}  # nosec B101
+
+
+def test_apply_skips_irrelevant_modules(tmp_path, caplog) -> None:
+    config_path = write_config(tmp_path, MINIMAL_CONFIG)
+    dst = tmp_path / "dst"
+    with caplog.at_level("DEBUG", logger="id_configurator"):
+        result = runner.invoke(
+            cli.app, ["apply", "--config", config_path, "--dst", str(dst), "-v"]
+        )
+    assert result.exit_code == 0  # nosec B101
+    assert "skipping module apt" in caplog.text  # nosec B101
+    assert "skipping module certificates" in caplog.text  # nosec B101
+
+
+def test_apply_runs_relevant_module(tmp_path, monkeypatch) -> None:
+    mock_run = MagicMock(
+        return_value=subprocess.CompletedProcess(
+            args=[], returncode=0, stdout="", stderr=""
+        )
+    )
+    monkeypatch.setattr("id_configurator.modules.certificates.subprocess.run", mock_run)
+
+    config_path = write_config(tmp_path, CONFIG_WITH_CERT)
+    dst = tmp_path / "dst"
+    result = runner.invoke(
+        cli.app, ["apply", "--config", config_path, "--dst", str(dst)]
+    )
+
+    assert result.exit_code == 0  # nosec B101
+    assert (dst / "usr/local/share/ca-certificates/my-ca.crt").read_bytes() == b"fake"  # nosec B101
+    mock_run.assert_called_once()
+
+
+def test_main_default_name_calls_app(monkeypatch) -> None:
+    mock_app = MagicMock()
+    monkeypatch.setattr(cli, "app", mock_app)
+    cli.main()
+    mock_app.assert_called_once()
+
+
+def test_main_other_name_does_not_call_app(monkeypatch) -> None:
+    mock_app = MagicMock()
+    monkeypatch.setattr(cli, "app", mock_app)
+    cli.main("id_configurator.__main__")
+    mock_app.assert_not_called()
diff --git a/tests/test_config.py b/tests/test_config.py
new file mode 100644
index 0000000..2974816
--- /dev/null
+++ b/tests/test_config.py
@@ -0,0 +1,163 @@
+import base64
+import json
+
+import pytest
+
+from id_configurator.config import (
+    AptSource,
+    Configuration,
+    load_configuration,
+    parse_configuration,
+)
+
+FULL_CONFIG = {
+    "uuid": "12345678-1234-5678-1234-567812345678",
+    "organisation": "InterDiode",
+    "description": "a test configuration",
+    "configurations": {
+        "certificates": [{"name": "my-ca", "content": "ZmFrZQ=="}],
+        "apt": {
+            "sources": [
+                {
+                    "name": "interdiode",
+                    "types": ["deb"],
+                    "uris": ["http://example.invalid/debian"],
+                    "suites": ["stable"],
+                    "components": ["main", "contrib"],
+                    "signed-by": "/etc/apt/keyrings/interdiode.asc",
+                }
+            ],
+            "keys": [{"name": "interdiode", "content": "ZmFrZQ=="}],
+        },
+        "yum": {
+            "repositories": [
+                {
+                    "name": "interdiode",
+                    "index-url": "http://example.invalid/yum",
+                    "gpg-url": "http://example.invalid/gpg",
+                }
+            ]
+        },
+        "python": {
+            "repositories": [
+                {"name": "interdiode", "index-url": "http://example.invalid/simple"}
+            ]
+        },
+    },
+}
+
+
+def test_parse_configuration_from_json() -> None:
+    configuration = parse_configuration(json.dumps(FULL_CONFIG))
+    assert isinstance(configuration, Configuration)  # nosec B101
+    assert configuration.organisation == "InterDiode"  # nosec B101
+    assert configuration.configurations.certificates[0].name == "my-ca"  # nosec B101
+    assert (
+        configuration.configurations.yum.repositories[0].index_url
+        == "http://example.invalid/yum"
+    )  # nosec B101
+    assert (
+        configuration.configurations.yum.repositories[0].gpg_url
+        == "http://example.invalid/gpg"
+    )  # nosec B101
+    assert (
+        configuration.configurations.python.repositories[0].index_url
+        == "http://example.invalid/simple"
+    )  # nosec B101
+    assert (
+        configuration.configurations.apt.sources[0].signed_by
+        == "/etc/apt/keyrings/interdiode.asc"
+    )  # nosec B101
+    assert configuration.configurations.apt.keys[0].name == "interdiode"  # nosec B101
+
+
+def test_parse_configuration_from_yaml() -> None:
+    raw = """
+    uuid: 12345678-1234-5678-1234-567812345678
+    organisation: InterDiode
+    """
+    configuration = parse_configuration(raw)
+    assert configuration.organisation == "InterDiode"  # nosec B101
+    assert configuration.description == ""  # nosec B101
+    assert configuration.configurations.certificates == []  # nosec B101
+
+
+def test_load_configuration_from_file(tmp_path) -> None:
+    config_file = tmp_path / "config.json"
+    config_file.write_text(json.dumps(FULL_CONFIG), encoding="utf-8")
+    configuration = load_configuration(config_file, None)
+    assert configuration.organisation == "InterDiode"  # nosec B101
+
+
+def test_load_configuration_from_env() -> None:
+    encoded = base64.b64encode(json.dumps(FULL_CONFIG).encode("utf-8")).decode("ascii")
+    configuration = load_configuration(None, encoded)
+    assert configuration.organisation == "InterDiode"  # nosec B101
+
+
+def test_load_configuration_without_source_raises() -> None:
+    with pytest.raises(ValueError, match="either --config or --config-env"):
+        load_configuration(None, None)
+
+
+def test_apt_source_to_deb822_minimal() -> None:
+    source = AptSource(
+        name="interdiode", uris=["http://example.invalid/debian"], suites=["stable"]
+    )
+    assert (
+        source.to_deb822()
+        == "Types: deb\nURIs: http://example.invalid/debian\nSuites: stable\nEnabled: yes\n"
+    )  # nosec B101
+
+
+def test_apt_source_to_deb822_full() -> None:
+    source = AptSource(
+        name="interdiode",
+        types=["deb", "deb-src"],
+        uris=["http://example.invalid/debian"],
+        suites=["stable"],
+        components=["main", "contrib"],
+        architectures=["amd64"],
+        languages=["en"],
+        targets=["deb"],
+        enabled=False,
+        trusted=True,
+        **{
+            "signed-by": "/etc/apt/keyrings/interdiode.asc",
+            "by-hash": True,
+            "allow-insecure": False,
+            "allow-weak": False,
+            "allow-downgrade-to-insecure": False,
+            "check-valid-until": True,
+            "valid-until-min": "10",
+            "valid-until-max": "1w",
+            "check-date": True,
+            "date-max-future": "1d",
+        },
+        pdiffs=True,
+        description="InterDiode APT repository",
+    )
+    rendered = source.to_deb822()
+    assert rendered.splitlines() == [  # nosec B101
+        "Types: deb deb-src",
+        "URIs: http://example.invalid/debian",
+        "Suites: stable",
+        "Components: main contrib",
+        "Architectures: amd64",
+        "Languages: en",
+        "Targets: deb",
+        "Signed-By: /etc/apt/keyrings/interdiode.asc",
+        "Trusted: yes",
+        "PDiffs: yes",
+        "By-Hash: yes",
+        "Allow-Insecure: no",
+        "Allow-Weak: no",
+        "Allow-Downgrade-To-Insecure: no",
+        "Check-Valid-Until: yes",
+        "Valid-Until-Min: 10",
+        "Valid-Until-Max: 1w",
+        "Check-Date: yes",
+        "Date-Max-Future: 1d",
+        "Description: InterDiode APT repository",
+        "Enabled: no",
+    ]
diff --git a/tests/test_context.py b/tests/test_context.py
new file mode 100644
index 0000000..a3b6fd1
--- /dev/null
+++ b/tests/test_context.py
@@ -0,0 +1,85 @@
+import pytest
+
+from id_configurator.config import Configuration
+from id_configurator.context import Context
+
+CONFIG = Configuration.model_validate(
+    {"uuid": "12345678-1234-5678-1234-567812345678", "organisation": "InterDiode"}
+)
+
+
+def make_context(tmp_path, with_src: bool = True) -> Context:
+    dst = tmp_path / "dst"
+    dst.mkdir()
+    src = None
+    if with_src:
+        src = tmp_path / "src"
+        src.mkdir()
+    return Context(config=CONFIG, dst=dst, src=src)
+
+
+def test_dst_path_within_destination(tmp_path) -> None:
+    context = make_context(tmp_path)
+    resolved = context.dst_path("etc/foo.conf")
+    assert resolved == context.dst / "etc" / "foo.conf"  # nosec B101
+
+
+def test_dst_path_rejects_escape(tmp_path) -> None:
+    context = make_context(tmp_path)
+    with pytest.raises(ValueError, match="refusing to write outside"):
+        context.dst_path("../escape.conf")
+
+
+def test_src_path_without_src(tmp_path) -> None:
+    context = make_context(tmp_path, with_src=False)
+    assert context.src_path("etc/foo.conf") is None  # nosec B101
+
+
+def test_src_path_with_src(tmp_path) -> None:
+    context = make_context(tmp_path)
+    resolved = context.src_path("etc/foo.conf")
+    assert resolved == context.src / "etc" / "foo.conf"  # nosec B101
+
+
+def test_write_file_creates_parents_and_content(tmp_path) -> None:
+    context = make_context(tmp_path)
+    path = context.write_file("etc/nested/foo.conf", b"hello")
+    assert path.read_bytes() == b"hello"  # nosec B101
+    assert path.stat().st_mode & 0o777 == 0o644  # nosec B101
+
+
+def test_read_src_file_without_src(tmp_path) -> None:
+    context = make_context(tmp_path, with_src=False)
+    assert context.read_src_file("etc/foo.conf") is None  # nosec B101
+
+
+def test_read_src_file_missing(tmp_path) -> None:
+    context = make_context(tmp_path)
+    assert context.read_src_file("etc/missing.conf") is None  # nosec B101
+
+
+def test_read_src_file_present(tmp_path) -> None:
+    context = make_context(tmp_path)
+    (context.src / "foo.conf").write_bytes(b"existing")
+    assert context.read_src_file("foo.conf") == b"existing"  # nosec B101
+
+
+def test_iter_src_dir_without_src(tmp_path) -> None:
+    context = make_context(tmp_path, with_src=False)
+    assert context.iter_src_dir("some/dir") == []  # nosec B101
+
+
+def test_iter_src_dir_missing_dir(tmp_path) -> None:
+    context = make_context(tmp_path)
+    assert context.iter_src_dir("missing-dir") == []  # nosec B101
+
+
+def test_iter_src_dir_lists_only_files(tmp_path) -> None:
+    context = make_context(tmp_path)
+    target = context.src / "certs"
+    target.mkdir()
+    (target / "a.crt").write_bytes(b"a")
+    (target / "b.crt").write_bytes(b"b")
+    (target / "subdir").mkdir()
+    result = context.iter_src_dir("certs")
+    assert [entry.name for entry in result] == ["a.crt", "b.crt"]  # nosec B101
diff --git a/tests/test_modules_base.py b/tests/test_modules_base.py
new file mode 100644
index 0000000..1bdaa01
--- /dev/null
+++ b/tests/test_modules_base.py
@@ -0,0 +1,19 @@
+from id_configurator.modules import base as base_module
+from id_configurator.modules.base import Module, all_modules, register
+
+
+def test_register_and_all_modules_are_isolated(monkeypatch) -> None:
+    monkeypatch.setattr(base_module, "_REGISTRY", [])
+
+    class DummyModule(Module):
+        name = "dummy"
+
+        def is_relevant(self, context) -> bool:
+            return True
+
+        def apply(self, context) -> None:
+            pass
+
+    register(DummyModule)
+
+    assert all_modules() == [DummyModule]  # nosec B101
diff --git a/tests/test_package.py b/tests/test_package.py
new file mode 100644
index 0000000..5ce03f5
--- /dev/null
+++ b/tests/test_package.py
@@ -0,0 +1,20 @@
+import importlib
+import sys
+from unittest.mock import MagicMock
+
+
+def test_package_exposes_app_and_main() -> None:
+    import id_configurator
+
+    assert id_configurator.main is id_configurator.cli.main  # nosec B101
+    assert id_configurator.app is id_configurator.cli.app  # nosec B101
+
+
+def test_dunder_main_module_does_not_launch_app_when_imported(monkeypatch) -> None:
+    mock_app = MagicMock()
+    monkeypatch.setattr("id_configurator.cli.app", mock_app)
+    sys.modules.pop("id_configurator.__main__", None)
+
+    importlib.import_module("id_configurator.__main__")
+
+    mock_app.assert_not_called()
diff --git a/tox.ini b/tox.ini
new file mode 100644
index 0000000..4a1e216
--- /dev/null
+++ b/tox.ini
@@ -0,0 +1,26 @@
+[tox]
+env_list = py313,py314,coverage
+isolated_build = true
+requires =
+    tox>=4
+    tox-uv>=1
+
+[testenv]
+package = wheel
+dependency_groups = test
+change_dir = {env_tmp_dir}
+set_env =
+    COVERAGE_FILE = {tox_root}/.coverage.{env_name}
+commands =
+    pytest {tox_root}/tests --cov-config={tox_root}/pyproject.toml --cov-fail-under=0 {posargs}
+
+[testenv:coverage]
+package = skip
+depends = py313,py314
+change_dir = {tox_root}
+dependency_groups = test
+set_env =
+    COVERAGE_FILE = {tox_root}/.coverage
+commands =
+    coverage combine
+    coverage report
diff --git a/uv.lock b/uv.lock
new file mode 100644
index 0000000..653f6c8
--- /dev/null
+++ b/uv.lock
@@ -0,0 +1,559 @@
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+version = 1
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